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The program BLAST would be best used for what purpose?


A) Determining what restriction sites are present in a fragment of DNA
B) Identifying a promoter sequence
C) Identifying splice donor and acceptor sites
D) Identify related sequences to a given DNA sequence in the Genbank database

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Why is the proteome larger than the genome?


A) Proteins may be modified by covalent addition of a variety of molecules
B) Not all genes are expressed in all cells at the same time
C) Many coding genes are transcribe into mRNA which can be alternatively spliced, and those transcripts produce different proteins so the ratio of the number of protein molecules the number of genes is greater than 1.
D) The total amount of protein in a cell as measured by mass is always greater than the total amount of DNA.

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Two genes that share a common ancestral gene will probably have significant homology.

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What type of computer based search methodology would most likely be used to identify a potential promoter for a gene in a nucleotide sequence?


A) Search-by-signal
B) Search-by-content
C) Search-by-identity
D) Search-by-recognition

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The purpose of sodium dodecyl sulfate (SDS) in a two-dimensional gel electrophoresis experiment is that it allows proteins to separated by


A) by charge only
B) primarily by molecular mass
C) by size only
D) net charge

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The genes of a gene family that consist of two or more homologous genes are called ________.


A) Orthologs
B) Paralogs
C) Polylogs
D) Homologs

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What is the term for two genes from two different species that are similar in sequence and serve the same function in each species?


A) Related genes
B) Paralogs
C) Gene family
D) Orthologs

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D

In two dimensional gel electrophoresis, proteins are first treated with SDS, separated according to molecular mass, and then separated by their net charge at a specific pH.

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A population of cells is treated with a polypeptide hormone that induces mitosis and the hormone's cell surface receptor is isolated after 15 minutes and subjected to fragmentation and mass spectrometry. Several of the peaks show a slight shift as compared to the same protein from cells not treated with the hormone. What is the most likely explanation of this phenomenon?


A) Phosphorylation of some amino acid residues.
B) mRNA editing resulting in a slightly different amino acid sequence.
C) Alternative exon usage.
D) Proteolytic processing.

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What field of study of genetics applies statistics and mathematical tools to genetic sequences in order to better understand the genetic information?


A) Structural genomics
B) Functional genomics
C) Proteomics
D) Bioinformatics

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What technique is used to separate cellular proteins for analysis?


A) Western blots
B) Antibody microarrays
C) Two-dimensional gel electrophoresis
D) Functional protein microarrays

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cDNA uses chromosomal DNA as its template.

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False

What can gene chips be used for?


A) To examine patterns of protein expression under various environmental conditions
B) To establish levels of genetic variation
C) To determine the mass of a gene
D) To identify the amount of a specific transcription factor in a cell.

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Gene knockouts in mice can be useful because


A) they can be used to develop models of human disease.
B) they identify DNA binding proteins
C) they limit mRNA production both from the knockout as well as the normal allele in diploids.
D) only genes that are actively transcribed in the embryo are susceptible to being knocked out.

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A

A database is defined as


A) A large collection of files stored in one place.
B) A small collection of files that are stored in different places
C) Files that are only used by the BLAST program
D) A large collection of files that are not annotated.

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What does detection of a fluorescent signal from one of the spots of a DNA microarray indicate?


A) The probe hybridized to the sequences present in that spot
B) The probe did not hybridize to that particular gene
C) The experiment was not conducted correctly
D) That the probe was non-specifically trapped by the material present in the spot.

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DNA microarrays may be paired with chromatin immunoprecipitation (ChIP) to


A) assay the use of substrates by different enzymes.
B) determine mRNA folding patterns
C) identify DNA sequences bound by specific proteins.
D) identify protein-protein interactions.

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________ can be used to determine the amino acid sequence of a protein or peptide.


A) X-ray crystallography
B) Nuclear magnetic resonance
C) Mass spectrometry
D) The ChIP assay

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What is a reason that the proteome is larger than the genome?


A) Alternative splicing
B) Proteins are constantly being synthesized and degraded.
C) Each protein has a specific function which are quite varied while the genes in the genome are only transcribed
D) Each protein has multiple functional domains while each gene consists of three basic parts.

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________ make it possible for researchers to study how an entire genome responds to an environmental stimulus.


A) Bioinformatics
B) PCR reactions
C) DNA microarrays
D) The BLAST program

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